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High-resolution linkage and quantitative trait locus mapping using an interspecific cross between Argopecten irradians irradians (♀) and A. purpuratus (♂)

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Abstract

The bay scallop and Peruvian scallop are economically important species. Interspecific hybrids of these two scallops outperformed both of their parent species in multiple growth traits but exhibited decreased fertility, which provides good models for the study of heterosis and species divergence. Genetic mapping serves as a chromosomal-level framework to investigate the molecular mechanisms of hybridization and introgression. In this study, high-resolution linkage maps were constructed for the bay and Peruvian scallops with an interspecific hybrid family. The linkage map of the bay scallop covered over 98.9% of the whole genome with 2994 mapped markers and the average marker interval of 0.32 cM. For the Peruvian scallop, 1585 markers were mapped with the average maker interval of 0.51 cM, covering 97.7% of the genome. Both the two linkage maps have 16 linkage groups, corresponding to the haploid chromosome number of the two species. Approximately, 54.5% of markers exhibited significant deviation from the expected Mendelian ratio of segregation, lending insights into the intrinsic incompatibility between the two species. QTLs related to growth and shell coloration were detected, which could explain 13.1% and 74.9% of the phenotypic variance, respectively. This represents important information for further evaluation. These findings are an important addition to the genomic resources for scallop genetic studies, and are especially useful for investigations on genomic incompatibility for hybridization, genome evolution of closely related species, and genetic enhancement programs in aquaculture.

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Acknowledgements

We acknowledge the Grant support from National Natural Science Foundation of China (U1706203, 31172404 and 31572618), Taishan Scholar Project Fund of Shandong Province of China, and Youth Talent Program Supported by Laboratory for Marine Fisheries Science and Food Production Processes, Pilot National Laboratory for Marine Science and Technology (Qingdao) (2018-MFS-T07).

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  1. Junxia Mao and Qifan Zeng contributed equally to this work.

Authors and Affiliations

  1. MOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China

    Junxia Mao, Qifan Zeng, Zujing Yang, Haoyuan Pan, Lijie Yao, Zhenmin Bao & Shi Wang

  2. Key Laboratory of Mariculture and Stock Enhancement in North China’s Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China

    Junxia Mao

  3. Laboratory for Marine Biology and Biotechnology, Pilot National Laboratory for Marine Science and Technology, Qingdao, 266237, China

    Qifan Zeng & Shi Wang

  4. Laboratory for Marine Fisheries Science and Food Production Processes, Pilot National Laboratory for Marine Science and Technology, Qingdao, 266237, China

    Zhenmin Bao

  5. Marine Science and Engineering College, Qingdao Agricultural University, Qingdao, 266109, China

    Chunde Wang

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Contributions

SW and CW: conceived and designed the study; JM, ZY, HP, and LY: prepared the materials and constructed the sequencing libraries; JM and QZ: conducted genetic mapping and other data analysis; ZB: advised and coordinated the study. All the authors contributed to manuscript writing, reviewing, and approved the final version for submission.

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Correspondence to Chunde Wang or Shi Wang.

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We declare that all applicable international, national, and/or institutional guidelines for sampling, care, and experimental use of organisms for the study have been followed and all necessary approvals have been obtained.

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Mao, J., Zeng, Q., Yang, Z. et al. High-resolution linkage and quantitative trait locus mapping using an interspecific cross between Argopecten irradians irradians (♀) and A. purpuratus (♂). Mar Life Sci Technol 2, 123–134 (2020). https://doi.org/10.1007/s42995-020-00029-z

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